GenMiner

Last updated on Jun 8, 2023
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GenMiner
Release date2008
ImplementationJava
AuthorsMartinez, R., Pasquier, N., and Pasquier, C.

GenMiner 1 2 3 4 is a Java implementation of the GenMiner algorithm for mining equivalence classes and minimal non-redundant association rule from gene expression data. This implementation integrates the R implementation of the Normalized Discretization method (NorDi) to preprocess gene expression data and the Java implementation of the JClose algorithm (JClose) to extract equivalence classes and minimal non-redundant association rules from these data.

  1. Ricardo Martinez, Claude Pasquier, Nicolas Pasquier (2007). GenMiner: Mining Informative Association Rules from Genomic Data. IEEE International Conference on Bioinformatics and Biomedicine (BIBM'07).

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  2. Ricardo Martinez, Nicolas Pasquier, Claude Pasquier (2008). GenMiner: Mining Non-Redundant Association Rules from Integrated Gene Expression Data and Annotations.. Bioinformatics (Oxford, England).

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  3. Ricardo Martinez, Nicolas Pasquier, Claude Pasquier (2008). Mining Association Rule Bases from Integrated Genomic Data and Annotations. 5th International Conference on Computational Intelligence Methods for Bioinformatics and Biostatistics (CIBB'08).

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  4. Ricardo Martinez, Nicolas Pasquier, Claude Pasquier (2009). Mining Association Rule Bases from Integrated Genomic Data and Annotations (Extended Version). Lecture Notes in Bioinformatics.

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Gene Expression Analysis Data Mining
Claude Pasquier
Claude Pasquier
Researcher in Computer Science / Computational Biology

Université côte d’Azur, CNRS, I3S Laboratory, Sophia Antipolis